News & Updates

Company updates, product announcements, and insights from the frontlines of AI-driven drug discovery.

May 26, 2026Blog

3D Molecular Analysis with CHEESE Embeddings: A Neurosteroid Case Study

How CHEESE Embeddings and machine learning predict the activity of novel tetrazolic neurosteroids as GABAA receptor positive allosteric modulators before synthesis — with electrostatic similarity outperforming shape-based analysis.

April 15, 2026Blog

Applying CHEESE Embeddings to Uncover Hidden Structural Patterns

How CHEESE Embeddings achieved 67% hit recall and 1st place in the 9ADD Challenge, outperforming classical Morgan fingerprint-based approaches.

March 19, 2026Newsletter

SynthonGPT Webinar; Partial Charges and Molecular Alignment in CHEESE Search

Join our upcoming SynthonGPT webinar and explore new CHEESE Search features — partial charges visualization and conformer alignment.

February 26, 2026Video

Practical Virtual Screening Cases with CHEESE Search

Walk-through of real-world virtual screening workflows using CHEESE Search across multiple databases and similarity metrics.

February 13, 2026Video

Sample Amino Acids Library in CHEESE (Similarity Search)

Demonstration of similarity search on a sample amino acids library using the CHEESE platform.

January 29, 2026Newsletter

Similarity Search Across 40+ Trillion Molecules with CHEESE SynthonGPT2

Introducing SynthonGPT2 — search ultra-large combinatorial chemical spaces from major vendors in seconds, with built-in ADMETox filtering.

October 23, 2025Newsletter

Unlock DEL Screens; 3D-Shape Search Alignment; Upcoming Events

Streamline DEL screening data into focused diversity sets in minutes, explore our new 3D shape alignment demo, and meet us at upcoming conferences.

September 10, 2025Newsletter

Secure and Focused Hit-Expansion with CHEESE Search

Privacy mode, similarity thresholding, and multi-database searches — new features for precise, confidential molecular discovery across 39B+ molecules.

July 24, 2025Newsletter

33B Ready-to-Order Molecules for Fast Hit Expansion

Accelerate drug discovery with 33 billion searchable molecules, AI-powered 3D shape and electrostatics metrics, and a 147x hit-rate boost.

March 12, 2025Newsletter

CHEESE/Deep MedChem at ACS Spring 2025!

Meet us in San Diego at ACS Spring 2025, see our presentation on CHEESE, and explore our new large-scale chemical space visualization.

February 17, 2025Video

CHEESE Explorer: Zoomable Prototype (ZINC15)

A demonstration of the zoomable CHEESE Explorer prototype for navigating and visualizing the ZINC15 chemical space.

December 15, 2024Newsletter

CHEESE Electrostatics: Moving Beyond DFT in Drug Discovery

How our electrostatic similarity engine achieves 0.98 DFT correlation while searching billions of molecules in sub-second time.

December 6, 2024Video

CHEESE: 3D Shape and Electrostatic Virtual Screening in a Vector Space

An overview of how CHEESE leverages vector-space representations for 3D shape and electrostatic virtual screening at scale.

September 27, 2024Video

Rapid Virtual Screening of Commercial Libraries with AI

How CHEESE enables rapid AI-powered virtual screening across commercial chemical libraries.

August 29, 2024Video

How to Predict ADMETox Properties for 1M Molecules in Minutes

A step-by-step tutorial on predicting ADMETox properties for one million molecules in minutes using the CHEESE platform.

August 22, 2024Video

How to Train a Custom QSAR Model with CHEESE Modeller

Step-by-step tutorial on building custom QSAR predictive models using CHEESE Modeller.

August 14, 2024Video

Interactive Molecular Space Exploration with AI

Explore molecular chemical spaces interactively using AI-powered visualization and search.

August 14, 2024Video

CHEESE Modeller: Training Models for Accelerating Docking

How to train predictive models with CHEESE Modeller to accelerate molecular docking workflows.

June 15, 2024News

Deep MedChem at BIO'24 in San Diego

It was a privilege for Deep MedChem to be part of the Czech Pavilion at BIO’24 together with great companies and institutions. The support from the Czech Ministry of Industry and Trade was excellent. Four days full of meetings, interactions and interesting discussions were a time very well spent!

May 20, 2024News

Enamine REAL Now Supported in CHEESE

We are excited to announce that Enamine-REAL DB is now covered by CHEESE Search. We now offer two databases: ZINC (700M molecules) and Enamine Ltd.’s Enamine-REAL (5.5B molecules). We are able to index basically any molecular database now. We improved the speed and accuracy of the search—you get results in sub-second times.

May 10, 2024News

CHEESE Electrostatics in Open Beta NOW!

We were pleased with the interest from the expert community after we announced the results of our CHEESE Electrostatics tool. We promised to make it available after some time and the time is NOW! You can try the CHEESE Electrostatics in beta yourself.

March 15, 2024Video

CHEESE Talk in Miton AI Talks Series

Our CTO Miroslav Lžičař gave a talk on how we make billion- and trillion-scale molecular spaces accessible for search and filtering by properties.

February 15, 2024News

CHEESE Modeller is Available for Customers!

Build your custom fast predictive models for molecular properties with CHEESE Modeller with state of the art prediction performance. Key benefits: speed of training, speed of prediction, very good performance (state of the art in most cases of ADMET properties), ability to train on your own data.

January 15, 2024News

On-Premise Version of CHEESE Search Now Available!

Due to popular demand our team has dedicated substantial efforts to bring you the on-premise version of CHEESE Search! We understand that many customers prioritize the security of their sensitive data. With OnPrem CHEESE, you can experience all the benefits while maintaining data confidentiality.

December 15, 2023News

Deep MedChem Will Commercialize CHEESE Products

We are thrilled to announce the establishment of Deep MedChem, a cutting-edge company dedicated to commercialize the CHEESE family of products—advanced molecular search tools and their extensions to the market. Founded in December, Deep MedChem is committed to revolutionizing drug development AI tools.

August 15, 2023Video

CHEESE Webinar with ChemSpace

Molecular Search in AI-Learned Chemical Similarity Space — presented in the ChemSpace webinar series.

July 15, 2023News

CHEESE Presented at BioML Conference

CHEESE was presented at the BioML Symposium with talks on AI-Based Super Fast Search in Molecular Space, covering problems of chemical similarity, molecular search, and molecular representation.

April 15, 2023News

CHEESE Presented at BioVaria Conference

CHEESE: Unique AI-based Super Fast Search in Chemical Space was presented, demonstrating benefits of making access to billion scale chemical space practically possible.